Optimization of RT-QuIC assay duration for screening chronic wasting disease in white-tailed deer
Optimization of RT-QuIC assay duration for screening chronic wasting disease in white-tailed deer
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Full item details
- creativework.keywords - en
- Transmissible spongiform encephalopathies
- creativework.keywords - fr
- Encéphalopathies spongiformes transmissibles
- dc.contributor.author
- Yilmaz, Gokhan
- Morrill, Tamara
- Pilot, William
- Ward, Cian
- Mitchell, Gordon
- Soutyrine, Andrei
- Dan, Hanhong
- Lin, Min
- Guan, Jiewen
- dc.date.accepted
- 2024-01-19
- dc.date.accessioned
- 2025-05-09T15:00:44Z
- dc.date.available
- 2025-05-09T15:00:44Z
- dc.date.issued
- 2024-02-01
- dc.date.submitted
- 2023-09-05
- dc.description.abstract - en
- Real-time quaking-induced conversion (RT-QuIC) assays have become a common tool to detect chronic wasting disease (CWD) and are very sensitive provided the assay duration is sufficient. However, a prolonged assay duration may lead to non-specific signal amplification. The wide range of pre-defined assay durations in current RT-QuIC applications presents a need for methods to optimize the RT-QuIC assay. In this study, receiver operating characteristic (ROC) analysis was applied to optimize the assay duration for CWD screening in obex and retropharyngeal lymph node (RLN) tissue specimens. Two different fluorescence thresholds were used: a fixed threshold based on background fluorescence (Tstdev) and a max-point ratio (maximum/background fluorescence) threshold (TMPR) to determine CWD positivity. The optimal assay duration was 33 h for obex and 30 h for RLN based on Tstdev, and 29 h for obex and 32 h for RLN based on TMPR. The optimized assay durations were then evaluated for screening CWD in white-tailed deer from an affected farm. At a replicate level, using the optimized assay durations with TStdev and TMPR, the level of agreement with enzyme-linked immunosorbent assay (ELISA) was significantly higher (p < 0.05) than that when using a 40 h assay duration. These findings demonstrate that the optimization of assay duration via a ROC analysis can improve RT-QuIC assays for screening CWD in white-tailed deer.
- dc.identifier.citation
- Yilmaz, G., Morrill, T., Pilot, W., Ward, C., Mitchell, G., Soutyrine, A., Dan, H., Lin, M., & Guan, J. (2024). Optimization of RT-quic assay duration for screening chronic wasting disease in white-tailed deer. Veterinary Sciences, 11(2), 60. https://doi.org/10.3390/vetsci11020060
- dc.identifier.doi
- https://doi.org/10.3390/vetsci11020060
- dc.identifier.uri
- https://open-science.canada.ca/handle/123456789/3621
- dc.language.iso
- en
- dc.publisher - en
- MDPI
- dc.rights - en
- Creative Commons Attribution 4.0 International (CC BY 4.0)
- dc.rights - fr
- Creative Commons Attribution 4.0 International (CC BY 4.0)
- dc.rights.uri - en
- https://creativecommons.org/licenses/by/4.0/
- dc.rights.uri - fr
- https://creativecommons.org/licenses/by/4.0/deed.fr
- dc.subject - en
- Animal health
- dc.subject - fr
- Santé animale
- dc.subject.en - en
- Animal health
- dc.subject.fr - fr
- Santé animale
- dc.title - en
- Optimization of RT-QuIC assay duration for screening chronic wasting disease in white-tailed deer
- dc.type - en
- Article
- dc.type - fr
- Article
- local.acceptedmanuscript.articlenum
- 60
- local.article.journalissue
- 2
- local.article.journaltitle - en
- Veterinary Sciences
- local.article.journalvolume
- 11
- local.peerreview - en
- Yes
- local.peerreview - fr
- Oui
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