Identifcation of Trichinella taxa by ITS-1 amplicon next-generation sequencing with an improved resolution for detecting underrepresented genotypes in mixed natural infections

Simple item page

Simple item page

Full item details

creativework.keywords - en
Trichinellosis and other foodborne zoonotic pathogens
Trichinella
creativework.keywords - fr
Trichinellose et autres pathogènes zoonotiques d'origine alimentaire
Trichinella
dc.contributor.author
Lobanov, Vladislav A.
Konecsni, Kelly A.
Scandrett, Brad W.
Jenkins, Emily J.
dc.date.accepted
2023-10-29
dc.date.accessioned
2025-03-14T18:36:38Z
dc.date.available
2025-03-14T18:36:38Z
dc.date.issued
2023-12-21
dc.date.submitted
2023-07-06
dc.description.abstract - en
Amplicon-based next-generation sequencing (NGS) has rapidly gained popularity as a powerful method for delineating taxa in complex communities, including helminths. Here, we applied this approach to identify species and genotypes of zoonotic nematodes of the Trichinella genus. A known limitation of the current multiplex PCR (mPCR) assay recommended by the International Commission on Trichinellosis is that it does not differentiate Trichinella nativa from T. chanchalensis.
dc.identifier.citation
Lobanov, V. A., Konecsni, K. A., Scandrett, W. B., & Jenkins, E. J. (2023, December 21). Identification of trichinella taxa by its-1 amplicon next-generation sequencing with an improved resolution for detecting underrepresented genotypes in mixed natural infections - parasites & vectors. BioMed Central. https://doi.org/10.1186/s13071-023-06035-1
dc.identifier.doi
https://doi.org/10.1186/s13071-023-06035-1
dc.identifier.uri
https://open-science.canada.ca/handle/123456789/3524
dc.language.iso
en
dc.publisher - en
BioMed Central
dc.rights - en
Creative Commons Attribution 4.0 International (CC BY 4.0)
dc.rights - fr
Creative Commons Attribution 4.0 International (CC BY 4.0)
dc.rights.uri - en
https://creativecommons.org/licenses/by/4.0/
dc.rights.uri - fr
https://creativecommons.org/licenses/by/4.0/deed.fr
dc.subject - en
Animal diseases
dc.subject - fr
Maladie animale
dc.subject.en - en
Animal diseases
dc.subject.fr - fr
Maladie animale
dc.title - en
Identifcation of Trichinella taxa by ITS-1 amplicon next-generation sequencing with an improved resolution for detecting underrepresented genotypes in mixed natural infections
dc.type - en
Article
dc.type - fr
Article
local.acceptedmanuscript.articlenum
466 (2023)
local.article.journaltitle - en
Parasites & Vectors
local.article.journalvolume
16
local.peerreview - en
Yes
local.peerreview - fr
Oui
Download(s)

Original bundle

Now showing 1 - 1 of 1

Thumbnail image

Name: IdentificationTrichinellaTaxaITS1AmpliconNextGenerationSequencingImprovedResolutionDetectingUnderrepresentedGenotypes.pdf

Size: 1.28 MB

Format: PDF

Download file

Collection(s)

Page details

Date modified: